Welcome!
I’m a postdoctoral scholar in the Laboratory of Prof. Ran Blekhman at the University of Chicago, where I study microbial transmission through metagenomic and genomic approaches. I am interested in studying how commensal as well as pathogenic bacteria spread and persist in individuals that are in close social contact. In particular, my current projects are focused on:
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Investigating strain transmission between maternal breast milk and her infant’s gut microbiome. The maternal milk often represents the sole source of nutrition for the baby for the first months of life, and yet very little is known about its microbial composition at the species and strain level. This study aims at studying the maternal milk microbiome in relation to the infant’s gut microbiome, and to better represent maternal milk in public repositoriese. This project is in collaboration with Prof. Cheryl Gale and Prof. Ellen Demerath.
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Investigating microbiome and antimicrobial resistance genes transmission in the hospital context. Hospitals represent a hotspot for the development of antimicrobial resistance and the acquisition of pathobionts during hospitalization can have serious health consequences. This project is in collaboration with the SET Center at the University of Chicago.
In addition, I’m involved in projects studying strain transmission within social groups of wild animals, in particular of wild baboons. This project is part of the Amboseli Baboon Research Project and it is a collaboration with the labs of Prof. Elizabeth Archie and Prof. Jenny Tung.
Most Recent News
An overview of all news can be found here.| Dec 15, 2025 | Our review is now featured in the January issue of Nature Reviews Genetics. |
| Dec 7, 2025 | The interview on my international experience as researcher has been published on the Italian newspaper Gazzetta dell’Emilia. |
| Oct 29, 2025 | Our preprint on milk and infant gut microbiome has been updated with new analysis and results! Stay tuned for more details. |
| Oct 8, 2025 | New preprint out on the demographic, behavioral, and ecological data from the Amboseli Baboon Research Project, one of the longest-running studies of a wild mammal population in the world |
| Sep 26, 2025 | New guidelines for equitable sequence data reuse are now published in Nature Microbiology. Grateful to Prof. Alex Probst and his team for leading this important work and for bringing together 160+ microbiome scientists (myself included) to contribute. |
Selected Publications
- Assembly, stability, and dynamics of the infant gut microbiome are linked to bacterial strains and functions in mother’s milkNature communications, 2025
- Theory of host-microbe symbioses: challenges and opportunitiesCell Host & Microbe, 2025
- Genomics of host–microbiome interactions in humansNature Reviews Genetics, 2025
- SPIRE: a Searchable, Planetary-scale mIcrobiome REsourceNucleic Acids Research, 2023
- C. difficile may be overdiagnosed in adults and is a prevalent commensal in infantseLife, 2023
- Diversity within species: interpreting strains in microbiomesNature Reviews Microbiology, 2020
- Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiomeCell host & microbe, 2018