Welcome!
I’m a postdoctoral scholar in the Laboratory of Prof. Ran Blekhman at the University of Chicago, where I study how the microbiome impacts health through metagenomic and genomic approaches. I am interested in understunding how the interplay between microbiome, diet, and social interactions impacts health outcomes and development in early life. In particular, my current projects are focused on:
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Investigating the role of maternal breast milk in modulating infant health leveraging multi-omics data. Breast milk is often an infant’s sole source of nutrition during the first months of life, yet its microbial and molecular composition, and how these components influence the developing gut microbiome and infant health, remain poorly understood. My recent work, showed that microbes in breast milk help shape the development of the infant gut microbiome. I am now expanding this research to understand how other components of breast milk influence infant health. This project is in collaboration with Prof. Ellen Demerath at the University of Minnesota.
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Investigating the transmission of the microbiome and antimicrobial resistance genes within hospitals. Hospitals represent a hotspot for the development of antimicrobial resistance and the acquisition of pathobionts during hospitalization can have serious health consequences, especially for vulnerable patients. I’m investigating how infants in the Neonatal Intensive Care Unit (NICU) acquire microbes and antimicrobial resistance genes, and the factors that shape this process. This project is in collaboration with the SET Center at the University of Chicago.
I also study the role of the microbiome in the health of wild animal populations, including baboons in the Amboseli Ecosystem (Kenya), rock hyraxes in Ein Gedi(Israel) and wolves. I’m particularly interested in how the microbiome is transmitted between individuals within social groups, and how its composition affects offspring survival, long-term health, and aging.
Most Recent News
An overview of all news can be found here.| Dec 15, 2025 | Our review is now featured in the January issue of Nature Reviews Genetics. |
| Dec 7, 2025 | The interview on my international experience as researcher has been published on the Italian newspaper Gazzetta dell’Emilia. |
| Oct 29, 2025 | Our preprint on milk and infant gut microbiome has been updated with new analysis and results! Stay tuned for more details. |
| Oct 8, 2025 | New preprint out on the demographic, behavioral, and ecological data from the Amboseli Baboon Research Project, one of the longest-running studies of a wild mammal population in the world |
| Sep 26, 2025 | New guidelines for equitable sequence data reuse are now published in Nature Microbiology. Grateful to Prof. Alex Probst and his team for leading this important work and for bringing together 160+ microbiome scientists (myself included) to contribute. |
Selected Publications
- Assembly, stability, and dynamics of the infant gut microbiome are linked to bacterial strains and functions in mother’s milkNature communications, 2025
- Theory of host-microbe symbioses: challenges and opportunitiesCell Host & Microbe, 2025
- Genomics of host–microbiome interactions in humansNature Reviews Genetics, 2025
- SPIRE: a Searchable, Planetary-scale mIcrobiome REsourceNucleic Acids Research, 2023
- C. difficile may be overdiagnosed in adults and is a prevalent commensal in infantseLife, 2023
- Diversity within species: interpreting strains in microbiomesNature Reviews Microbiology, 2020
- Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiomeCell host & microbe, 2018